![cellprofiler properties file cellprofiler properties file](https://cellprofiler-website.s3.amazonaws.com/images/cpa_screenshot.png)
Select, name and then import the remaining sheets to complete the database. If you’ve exported spreadsheets to multiple subfolders, you can repeat the import sequence for the contents of each folder. Entering the same “ Table name” when importing additional sheets will allow you to merge datasets together, which may be useful when combining multiple runs (e.g. Nuclei.csv from experiment 1 and experiment 2). If there are large numbers of subfolders to combine, you may want to try using concatenating files with csvstack before importing, or generating the database with cytominer-database.
![cellprofiler properties file cellprofiler properties file](http://d1zymp9ayga15t.cloudfront.net/images/Step2pic2.jpg)
If that’s been done correctly, you should now be able to see all the imported tables within your new database. Press “ File - Write Changes” to save the database. We’ve now finished with DBBrowser for now.
CELLPROFILER PROPERTIES FILE SOFTWARE
This software can also be useful for viewing your database tables, which can be done by clicking the “ Browse Data” tab. properties fileĪlongside the database, CellProfiler Analyst also needs a. properties file to tell it where the database is and which images, objects and settings you’d like to use with that database. Option 1 – Have CellProfiler do most of it for you There are two ways we can create this file. While we don’t want to run the entire analysis again, we can instead construct a pipeline using just a single image set and run that with the ExportToDatabase module to generate a. properties file for us to use with our database. Open up the CellProfiler pipeline you previously used to perform the analysis, then remove all but a single set of images. We won’t be using the results data from this run so which set of images is not important, what matters is that we can run the pipeline workflow from start to end. You should also disable any other Export/SaveImage modules to avoid overwriting results from your original run.Īt the end of your pipeline, add an “ ExportToDatabase” module and enable the option to generate a.